Microbial Reduction of Crystalline Iron(III) Oxides: Influence of Oxide Surface Area and Potential for Cell Growth

Quantitative aspects of microbial crystalline iron- (III) oxide reduction were examined using a dissimilatory iron(III) oxide-reducing bacterium (Shewanella alga strain BrY). The initial rate and long-term extent of reduction of a range of synthetic iron(III) oxides were linearly correlated with oxide surface area. Oxide reduction rates reached an asymptote at cell concentrations in excess of ≈1 x 109/m2 of oxide surface. Experiments with microbially reduced goethite that had been washed with pH 5 sodium acetate to remove adsorbed Fe(II) suggested that formation of a Fe(II) surface phase (adsorbed or precipitated) limited the extent of iron(III) oxide reduction. These results demonstrated explicitly that the rate and extent of microbial iron (III) oxide reduction is controlled by the surface area and site concentration of the solid phase. Strain BrY grew in media with synthetic goethite as the sole electron acceptor. The quantity of cells produced per micromole of goethite reduced (2.5 X 106) was comparable to that determined previously for growth of BrY and other dissimilatory Fe (III)- reducing bacteria coupled to amorphous iron(III) oxide reduction. BrY reduced a substantial fraction (8-18%) of the crystalline iron(III) oxide content of a variety of soil and subsurface materials, and several cultures containing these materials were transferred repeatedly with continued active Fe(III) reduction. These findings indicate that Fe(III)- reducing bacteria may be able to survive and produce significant quantities of Fe(II) in anaerobic soil and subsurface environments where crystalline iron(III) oxides (e.g., goethite) are the dominant forms of Fe- (III) available for microbial reduction. Results suggest that the potential for cell growth and Fe (II) generation will be determined by the iron (III) oxide surface site concentration in the soil or sediment matrix

Microbial Reduction of Crystalline Iron(III) Oxides: Influence of Oxide Surface Area and Potential for Cell Growth

Quantitative aspects of microbial crystalline iron- (III) oxide reduction were examined using a dissimilatory iron(III) oxide-reducing bacterium (Shewanella alga strain BrY). The initial rate and long-term extent of reduction of a range of synthetic iron(III) oxides were linearly correlated with oxide surface area. Oxide reduction rates reached an asymptote at cell concentrations in excess of ≈1 x 109/m2 of oxide surface. Experiments with microbially reduced goethite that had been washed with pH 5 sodium acetate to remove adsorbed Fe(II) suggested that formation of a Fe(II) surface phase (adsorbed or precipitated) limited the extent of iron(III) oxide reduction. These results demonstrated explicitly that the rate and extent of microbial iron (III) oxide reduction is controlled by the surface area and site concentration of the solid phase. Strain BrY grew in media with synthetic goethite as the sole electron acceptor. The quantity of cells produced per micromole of goethite reduced (2.5 X 106) was comparable to that determined previously for growth of BrY and other dissimilatory Fe (III)- reducing bacteria coupled to amorphous iron(III) oxide reduction. BrY reduced a substantial fraction (8-18%) of the crystalline iron(III) oxide content of a variety of soil and subsurface materials, and several cultures containing these materials were transferred repeatedly with continued active Fe(III) reduction. These findings indicate that Fe(III)- reducing bacteria may be able to survive and produce significant quantities of Fe(II) in anaerobic soil and subsurface environments where crystalline iron(III) oxides (e.g., goethite) are the dominant forms of Fe- (III) available for microbial reduction. Results suggest that the potential for cell growth and Fe (II) generation will be determined by the iron (III) oxide surface site concentration in the soil or sediment matrix

Influence of Aqueous and Solid-Phase Fe(II) Complexants on Microbial Reduction of Crystalline Iron(III) Oxides

The influence of aqueous (NTA and EDTA) and solidphase (aluminum oxide, layer silicates) Fe(II) complexants on the long-term microbial reduction of synthetic goethite by Shewanella alga strain BrY was studied. NTA enhanced goethite reduction by promoting aqueous Fe(II) accumulation, in direct proportion to its concentration in culture medium (0.01-5 mM). In contrast, EDTA failed to stimulate goethite reduction at concentrations e1 mM, and 5 mM EDTA enhanced the final extent of reduction by only 25% in relation to nonchelator controls. The minor effect of EDTA compared to NTA, despite the greater stability of the Fe(II)- EDTA complex, likely resulted from sorption of Fe(II)- EDTA complexes to goethite. Equilibrium Fe(II) speciation calculations showed that Fe(II)aq should increase with NTA at the expense of the solid-phase Fe(II) species, whereas the opposite trend was true for EDTA due to Fe(II)EDTA adsorption. The presence of aluminum oxide and layer silicates led to a variable but significant (1.5 to \u3e 3-fold) increase in the extent of goethite reduction. Speciation of Fe(II) verified the binding of Fe(II) by these solid-phase materials. Our results support the hypothesis that iron(III) oxide reduction may be enhanced by aqueous or solid-phase compounds which prevent or delay Fe(II) sorption to oxide and FeRB cell surfaces

Influence of Aqueous and Solid-Phase Fe(II) Complexants on Microbial Reduction of Crystalline Iron(III) Oxides

The influence of aqueous (NTA and EDTA) and solidphase (aluminum oxide, layer silicates) Fe(II) complexants on the long-term microbial reduction of synthetic goethite by Shewanella alga strain BrY was studied. NTA enhanced goethite reduction by promoting aqueous Fe(II) accumulation, in direct proportion to its concentration in culture medium (0.01-5 mM). In contrast, EDTA failed to stimulate goethite reduction at concentrations e1 mM, and 5 mM EDTA enhanced the final extent of reduction by only 25% in relation to nonchelator controls. The minor effect of EDTA compared to NTA, despite the greater stability of the Fe(II)- EDTA complex, likely resulted from sorption of Fe(II)- EDTA complexes to goethite. Equilibrium Fe(II) speciation calculations showed that Fe(II)aq should increase with NTA at the expense of the solid-phase Fe(II) species, whereas the opposite trend was true for EDTA due to Fe(II)EDTA adsorption. The presence of aluminum oxide and layer silicates led to a variable but significant (1.5 to \u3e 3-fold) increase in the extent of goethite reduction. Speciation of Fe(II) verified the binding of Fe(II) by these solid-phase materials. Our results support the hypothesis that iron(III) oxide reduction may be enhanced by aqueous or solid-phase compounds which prevent or delay Fe(II) sorption to oxide and FeRB cell surfaces

Sorption of Binary Mixtures of Aromatic Nitrogen Heterocyclic Compounds on Subsurface Materials

Single and binary solute sorption of pyridine, quinoline, and acridine has been investigated on two low organic carbon subsurface materials with similar properties but different equilibrium pH when saturated with water. Single solute sorption for all compounds is higher in the acidic soil as compared to the basic soil, reflecting stronger sorption of the protonated organic cations. The protonated species exhibit high selectivity for the exchange complex at low aqueous concentration with selectivity increasing with ring number. Binary sorption experiments with quinoline/pyridine and quinoline/acridine demonstrate that competitive sorption occurs between compounds in the acidic subsoil where the protonated compound species predominate in solution. In contrast, competition is minimal in the basic subsoil when the compounds are neutral. The competition between compounds is consistent with their measured single solute sorption and suggests mass action on a common set of high-affinity surface sites. A simplified model based on ideal adsorbed solution theory (IAS) is used to provide simulations of binary solute sorption that are in good qualitative agreement with experimental results. It is suggested that competition between ionized solutes may significantly influence transport of organic mixtures when the groundwater pH is near the pKa of the compounds

Molecular analysis of sarcomeric and non-sarcomeric genes in patients with hypertrophic cardiomyopathy.

Background: Hypertrophic cardiomyopathy (HCM) is a common genetic heart disorder characterized by unexplained left ventricle hypertrophy associated with non-dilated ventricular chambers. Several genes encoding heart sarcomeric proteins have been associated to HCM, but a small proportion of HCM patients harbor alterations in other non-sarcomeric loci. The variable expression of HCM seems influenced by genetic modifier factors and new sequencing technologies are redefining the understanding of genotype–phenotype relationships, even if the interpretations of the numerous identified variants pose several challenges. Methods and results: We investigated 62 sarcomeric and non-sarcomeric genes in 41 HCM cases and in 3 HCM-related disorders patients. We employed an integrated approach that combines multiple tools for the prediction, annotation and visualization of functional variants. Genotype–phenotype correlations were carried out for inspecting the involvement of each gene in age onset and clinical variability of HCM. The 80% of the non-syndromic patients showed at least one rare non-synonymous variant (nsSNV) and among them, 58% carried alterations in sarcomeric loci, 14% in desmosomal and 7% in other non-sarcomeric ones without any sarcomere change. Statistical analyses revealed an inverse correlation between the number of nsSNVs and age at onset, and a relationship between the clinical variability and number and type of variants. Conclusions: Our results extend the mutational spectrum of HCM and contribute in defining the molecular pathogenesis and inheritance pattern(s) of this condition. Besides, we delineate a specific procedure for the identification of the most likely pathogenetic variants for a next generation sequencing approach embodied in a clinical context

Kemod: A Mixed Chemical Kinetic And Equilibrium Model of Aqueous and Solid Phase Geochemical Reactions

This report presents the development of a mixed chemical Kinetic and Equilibrium MODel (KEMOD), in which every chemical species can be treated either as a equilibrium-controlled or as a kinetically controlled reaction. The reaction processes include aqueous complexation, adsorption/ desorption, ion exchange, precipitation/dissolution, oxidation/reduction, and acid/base reactions. Further development and modification of KEMOD can be made in: (1) inclusion of species switching solution algorithms, (2) incorporation of the effect of temperature and pressure on equilibrium and rate constants, and (3) extension to high ionic strength

Stress-induced O-GlcNAcylation: an adaptive process of injured cells

In the 30 years, since the discovery of nucleocytoplasmic glycosylation, O-GlcNAc has been implicated in regulating cellular processes as diverse as protein folding, localization, degradation, activity, post-translational modifications, and interactions. The cell co-ordinates these molecular events, on thousands of cellular proteins, in concert with environmental and physiological cues to fine-tune epigenetics, transcription, translation, signal transduction, cell cycle, and metabolism. The cellular stress response is no exception: diverse forms of injury result in dynamic changes to the O-GlcNAc subproteome that promote survival. In this review, we discuss the biosynthesis of O-GlcNAc, the mechanisms by which O-GlcNAc promotes cytoprotection, and the clinical significance of these data

PNNL/Alabama/ORNL Project Activities and Results

The hypothesis of this report is Mobile radionuclides in low-permeability porous matrix regions of fractured saprolite can be effectively isolated and immobilized by stimulating localized in-situ biological activity in highly-permeable fractured and microfractured zones within the saprolite